|

Dr.
Rob Toonen
Section
of Evolution and Ecology
University
of California, Davis
Davis,
CA 95616
Part
1 previously printed in the January 2000 issue of FAMA.
In
a recent issue of FAMA there was an article entitled "Are Plenums
Obsolete?" (Cohen 1999). I was glad to see that title, and expected
to read an article suggesting that a plenum (which is essentially nothing
more than an empty space screened-off beneath the gravel or sandbed in
an aquarium) is not a necessary component of a successful natural nitrate
reduction (NNR)- based reef tank. Upon reading the article, however, I
was disappointed to discover it was little more than a product review
for a new filter medium. I'm not saying that there is anything wrong with
the product, but only that I had expected to see some review of the writings
of biologists like myself, Ron Shimek, Eric Borneman & Jonathon Lowrie,
who have been trying to point out that many of the most successful hobbyists
base their systems on trying to emulate natural conditions found in the
areas from which their animals originate. There have been a number of
articles written about live sand in virtually every major aquarium magazine
over the past couple of years, and the virtues and evils of a plenum have
been vigorously debated by both sides of the dispute (in person, if not
in print). I expected that someone had finally noticed that there are
an active group of people who suggest that all the reported benefits of
a plenum (and more) can be had simply by the inclusion of a deep sandbed
in the aquarium or sump, and that the added complications of screening
off a void space beneath those sediments is not only unnecessary, but
may negatively impact the performance of the sediment system (relative
to nature).
The article "Are Plenums Obsolete?" starts
off much as I would start this one - by pointing out that there is no
real agreement (even among the "experts") on the ideal conditions
for establishing and maintaining a plenum system. There are also some
questions regarding the efficiency and mechanism of action for these systems,
because the void space of a plenum lacks a substrate on which the desirable
bacteria can grow (other than the walls of the aquarium and the flocculant
debris that filters into the void). The successful establishment of a
so-called "Jaubert-style" system is further complicated by a
number of difficult decisions you must make in establishing a plenum in
any system, including: the volume of the plenum and size of the mesh used
to separate it from the substrate, the depth, particle size and composition
of the substrate used, and the correct order of sand/rock/livestock introduction
as well as the proper "break-in" period of the tank. Finally,
there are arguments made about storage of nutrients and the dangers of
their release back into the aquarium, and a variety of other dangers that
are supposed to be associated with the decision to include a plenum in
the aquarium (some are reasonable, many more are not). I don't disagree
with any of those points, but I would go one step further and point out
that for every rule in biology, there is an exception. What I mean by
that statement is that there will always be someone who by luck, skill,
or sheer stubbornness will succeed in keeping a tank that, by all reasonable
logic, should fail miserably; conversely, there will be the unfortunate
soul who does everything "right" but still can't keep make their
tank work. I'm sure that anyone who has been in the hobby for a long time
will concede that as truth.
It
was at this point that I part ways with the author of the previous article.
I expected that given his introduction to that article, the next step
would be to point out that in nature, the recycling of nutrients (such
as nitrogenous wastes released by fish and corals) is accomplished largely
by the seagrass beds and mangrove lagoons typically adjacent to reef areas
(Lowrie & Borneman 1998, Toonen 1998-99). Lowrie and Borneman (1998)
provide this quote from Ogden (1988) to illustrate the importance of interaction
between coral reefs and the adjacent communities to the existence and
persistence of coral reefs: "Mangrove and seagrass systems are sinks,
trapping and accumulating organic and inorganic material and permitting
the growth of coral reefs offshore (while) coral reefs buffer the physical
influence of the ocean and permit the development...of lagoon and sedimentary
environments suitable for mangroves and seagrasses."
Coral reefs and the nearby seagrass and mangrove habitats are closely
linked ecosystems, and are largely dependant upon one another. As aquarists
this fact should be of particular interest, because we can benefit in
our efforts by taking advantage of both the processes that occur in the
sea-floor sediments common to these adjacent habitats as well as those
that take place on the reefs. The importance of sediments is often downplayed
by aquarists, and several well-known authors have gone so far as to suggest
that inclusion of sediments in the aquarium dooms a system to ultimate
failure. Such statements fly in the face of basic scientific research
that suggests sediment processes are not only beneficial to the existence
of coral reefs, but may play a large part in the formation of the reefs
themselves. In fact, Kinsey (1985) states that "gross production
and calcification in coral reefs are, nevertheless, clearly dominated
by benthic processes." Benthic (associated with the seafloor) marine
organisms comprise a broad assemblage of diverse forms that are grouped
together not by taxonomic relatedness, but rather on the basis of where
they live. These benthic organisms are directly or indirectly involved
in most of the physical and chemical processes that occur in marine sediments,
and are therefore an essential part of the healthy function of coral reef
ecosystems (Kinsey 1985, Day et al. 1989). If that is true (and the number
of research papers in the scientific journals that support this assertion
is enormous), then how can it be that the inclusion of an "essential
part of the healthy function of coral reef ecosystems" dooms an aquarium?
In this article, I want to summarize the basic components of the sediment-rich
habitats adjacent to coral reefs and the function that these systems play
in nature and in aquaria. The fine sediments in these near-reef communities
are predominantly carbonate rubble derived from (depending on the location)
coral skeletons (often via grazing by parrotfishes), coralline and calcareous
algae (e.g., Halimeda, Penicillus, Udotea, and Rhipocephalus), molluscs,
foraminiferans (unicellular protozoans related to amoeba) and diatoms.
These sand-flat areas look barren and uninteresting to most, but these
areas are really hot-beds of biological activity. If one were to magically
remove all the sediment from the sea-floor in one of these areas, while
'freezing' the animals that lived within them in place, you would still
be able to see the form and structure of the region maintained in the
mass of live animals left behind. If you were to take a small sample of
sediment (say a coffee can-sized piece of the sea floor) from a sheltered
sea grass bed behind a reef, and run it through a sieve (as many marine
biologists have done), you would likely find 1 or 2 (if any) large animals
(1 - 10 cm in length), and dozens to perhaps a hundred small animals (0.1
- 1.0 cm). Despite their abundance, these animals would still be a tiny
fraction of the total number of animals in the sand, however. Thousands
or perhaps tens of thousands of even smaller animals would have just passed
through your sieve (primarily these animals would be nematodes, but some
rotifers, and other, more obscure forms such as kinorhynchs and tardigrades
could also be present). These animals are extremely common, and are almost
certainly present in every reef tank, but few people have heard of these
groups and even fewer have ever seen one of the animals. Even when all
these groups are combined together, those animals would account for only
a tiny fraction of the total number of live organisms in the sediment
sample, because the protozoans and bacteria covering every sand grain
and living in the water film around individual sand grains would number
in the millions to billions. The biology of these unfamiliar animals is
covered in greater detail in a variety of articles (e.g., Ron Shimek's
monthly "Without a Backbone" column in Aquarium Frontiers and
my "Reefkeepers Guide to Invertebrate Zoology" column in Aquarium.Net),
or can be easily located in any introductory Invertebrate Zoology text
from a library.
The action of these animals can dramatically affect the habitats in which
they live, and may also positively or negatively affect one another. For
example, oysters clear the water through filter-feeding, and stabilize
the substrate by building "reefs" of solid shells; burrowing
shrimps (such as the Thallasinid shrimp Upogebia and Callianassa) increase
turbidity (a description of the suspended particle content and
"cloudiness" of water) through their excavation activities,
and "soften" the sediments by continually turning them over
and depositing feces around their burrows (which other organisms can ingest).
Obviously, the predominance of one or the other of the organisms in a
given area will influence the suitability of that habitat for a variety
of other benthic animals.
The importance of various components of the sediment community and the
role each member plays in the chemical and biological cycling of nutrients
in the sea are the focus of numerous reviews and a variety of books covering
different aspects of sediment ecology in detail. It would be impossible
to summarize current knowledge of nutrient cycling or even biological
activities of sediment-dwelling animals in any short article. Instead,
I am going to try to provide a thumb-nail sketch of the factors that should
be considered, and the characteristics of various habitats where efficient
nutrient processing takes place (because I think that is what is required
for a hobbyist to make an informed decision regarding the utility and
design of a sandbed for the aquaria). This article is based on a more
detailed and more thoroughly referenced one written as a three part series
for the Breeders Registry (Toonen 1998-99). Sam Gamble has also written
a series of articles on sediment function (Gamble 1996-98), and other
articles on the structure and function of sediment communities that I
highly recommend for interested readers are the Lowrie & Borneman
article mentioned above (1998) and an IRC #Reefs talk given by Ron Shimek
(Shimek 1998a).
When I discuss sand-dwelling organisms or sediment communities herein,
I am referring to the community as a whole, including fungi, bacteria,
protozoans, blue-green algae (cyanobacteria), algae (in which I include
diatoms, dinoflagellates, etc.), nematodes, polychaetes, rotifers, micro-crustaceans
(such as copepods, amphipods, isopods and ostracods), molluscs, and all
the other interesting and obscure organisms that inhabit marine sediments.
Regardless of the taxonomic affinity of the critters in marine sediments,
there are a variety of physical, chemical and biological factors that
play an important role in determining the abundance and species composition
of these communities, and I will try to summarize some of the most important
ones here.
Physical
regulatory factors:
There
are a variety of physical factors that can weigh heavily in determining
the composition and abundance of infaunal communities. One of the most
important factors in regulating photosynthetic organisms is, of course,
the availability and quality of light. The quality and quantity of light
not only affects photosynthesis directly, but may affect non-photosynthetic
organisms indirectly, as well. For example, oxygen production from photosynthesis
depends on light penetration, and is partially responsible for determining
the depth of oxygen penetration of sediments. Thus, the predominance of
aerobic (occuring in oxidized environments) or anaerobic/anoxic
(occurring in reduced environments) metabolism may be due, in part, to
the indirect effects of light penetration into the sediments.
Aside from light, temperature also plays an important role in determining
the structure of these communities and the rates at which metabolic processes
occur. It is intuitive that as temperature increases, so does the rate
of metabolic processes, until the thermal limit of the organism is exceeded,
at which point metabolism usually shuts down (and the animals die). The
temperature of sediments can impact not only the communities of organisms
which are present, but can also change the chemical pathways that are
most efficient for a variety of biological processes. For example, Nedwell
and Floodgate (1972) showed that in the sediments they were studying,
the majority of sulfide production originated from sulfate if the temperature
was above 10°C, but from organic sulfur at colder temperatures. These
were the same sediments with the same organisms contained within them.
It is worth noting that sediments collected from sites at which temperatures
are very different than those within a tank may produce unexpected or
perhaps even unwanted results not simply because the animals are incapable
of surviving (which is frequently the case), but also because the conditions
under which those organisms are kept may favor a different chemical pathway.
Physical disturbance (whether in the form of bioturbation or actual disturbance)
is also important in determining the diversity and abundance of benthic
organisms. There is a bell-shaped relationship between disturbance and
animal diversity in many environments - what I mean by that is in the
absence of any disturbance overall diversity is reduced, as it
is in the presence of high disturbance. In general, with turnover, the
microbial communities are the most negatively impacted, thereby reducing
the bacterial effect of the sediment compared to what it would be if undisturbed.
However, bacteria take up nutrients at the highest rate when actively
growing, and some minuscule amount of disturbance allowing such growth
is good (Shimek 1998b). The activity of the small animals living within
the sediments causes a significant amount of disturbance (Shimek 1998b),
and this is beneficial to keeping the sandbed in a constant state of growth,
during which the uptake of nutrients is maximized. Adding to that disturbance
by incorporating large "sand-stirring" animals or otherwise
disturbing the sediments tends to push the relationship "over the
hump" and diversity within the sediments becomes reduced. Thus, the
common recommendations to to add "substrate sifting" organisms
(such as gobies, horseshoe crabs, and sea stars) to "clean"
the substrate by removing excess organic matter also results in a decrease
in bacterial substrate, a removal of burrowing infauna (which are the
justification for the cost of live sand in the first place), and a general
decrease in the effectiveness of the live sand. Likewise, siphoning, stirring
or otherwise disturbing the sediments in an effort to "clean"
them is misguided and ultimately counter-productive. The normal compliment
of sediment infauna (I'll discuss these in more detail below) coupled
with a few low-impact bioturbators, such as stichopod sea cucumbers (e.g.,
the "Tiger-tail" sea cucumber, Holothuria sp.), polychaete
worms (e.g., spaghetti and other "bristleworms"), certain brittle
stars (e.g., Ophioderma or Ophiocoma spp.), or some "mud
snails" (e.g., ceriths or even a small conch) is all that is needed
for the sandbed to function at full capacity.
Water
flow and quality are "undoubtedly two of the most important, and
yet least studied, factors that regulate the activities of microbes"
(Day et al. 1989). Within the heading "water quality" are included
all chemical parameters of seawater composition, including salinity, oxygen
content, nutrient content, and so on (we'll cover these under the next
category: chemical factors). Many of these factors may be interrelated
(such as salinity, temperature and oxygen content), and these relationships
often complicate our understanding of these systems.
High energy environments, such as wave-swept beaches, tend to have few
species of sand-swelling organisms, whereas low energy environments, such
as sea grass beds, tend to have many (Table 1). See Table 2 for a description
of the actual particle sizes of the "Predominant sediment type"
in Table 1.
|
Table
1
|
|
Habitat
|
Number
of Species
|
Number
of Animals / m²
|
Predominant
Sediment Type
|
|
Exposed
Beach
Sheltered Beach
Coastal
Shelf
Sea
Grass Bed
Estuarine
Beach
|
5-10
10-20
30-40
10-20
5-20
|
450
1,600
1,000
18,000
100,000
|
gravel
and boulders
coarse
sands
fine
sands
fine
sands and silts
fine
sands, silts, and clays
|
|
Adapted
from McClusky 1981, Day et al. 1989 & Adey and Loveland 1991
|
Aside
from the "energy level" of the environment in which sediments
exist, the exchange of nutrients between the water column and the sediments,
and the degree to which dissolved nutrients can be acted upon by sediment-dwelling
organisms depends on the velocity of the ambient water and the contact
time of that water mass with the sediments. In our tanks, contact time
is of little concern because the systems are closed, and water recirculates
over the sand bed repeatedly. However, the velocity of the water flow
across the sediments will still affect the suspension of sediments, the
physical forces which organisms inhabiting the sediments must deal with,
and the efficiency of nutrient transfer between the water and the sand
bed. The movement of particles is more-or-less linearly related to water
velocity, and it is only at speeds below about 20 cm per second that fine
to medium-grained sands (0.1 - 0.5 mm particle sizes) will remain unsuspended
(Davis 1983). At large grain sizes, the water velocity required to move
particles obviously increases, but surprisingly, the same can happen at
much finer grain sizes: consolidated (packed and bacterially clumped)
silts and clays may be as difficult to resuspend as are gravel and boulders
(Davis 1983). In our tanks, however, we are aiming for non-consolidated
sediments, and thus the flow rates required by your animals must also
figure in to your calculation of ideal grain sizes for a sand bed, if
you are to include one.
Finally, the texture, composition, and grain size of the sediments can
have perhaps the most dramatic effect of all on the communities living
within them. Of course, the distribution of particle sizes of sediments
is not independent of other factors, such as the "energy" level
of the system, but all things being equal, coarse-grained sediments tend
to have both reduced populations and fewer species than do fine-grained
sediments (Fenchel 1967, Dale 1974). There are a variety of potential
explanations for this, first coarse-grained sediments tend to occur in
high energy systems, which tend to have smaller reserves of organic and
inorganic nutrients than do sediments rich in silts and clays, which contain
more water than an equivalent volume of coarse-grained sediments (see
Table 2). All of these factors are, of course, potentially interrelated,
but the bottom line is that collodal sediments contain (on average) 68
times as many bacteria per unit volume as do fine sands.
|
Table
2
|
| . |
Approximate
Grain Size - µm (mm)
|
Approximate
Water Content %
|
Relative
Abundance of Bacteria
|
|
Gravel
and boulders
Coarse sands
Fine
sands
Silts
Clays
Colloidal
sediments
|
2000
+ (>2)
500-2000
(0.5 - 2)
50-500 (0.05 - 0.5)
5-50
(0.005 - 0.05)
1-5
(0.001 - 0.005)
<
1 (< 0.001)
|
|
|
|
Adapted
from Rheinheimer 1985, - denotes not measured, but certainly <<
1.
|
These
relationships have a variety of other consequences on other physical factors
including decreased light and oxygen penetration in finer sediments (thereby
decreasing the depth at which anaerobic activities replace aerobic ones).
In coarser sediments, there is increased speed of water passage, decreased
habitat stability and decreased time to desiccation (drying out when not
submerged) as physical consequences of sediment particle size.
Chemical
regulatory factors:
It
is impossible to discuss the role of a sand bed in the aquarium without
covering some basic chemistry, because much of the function we ask our
sand bed to perform is involved in nutrient cycling. Most nutrient cycling
is accomplished by the bacteria inhabiting the sediments, but habitats
differ in both the demand for and the ability to fix nitrogen (Table 3),
and the relative rates of nitrification and denitrification (Table 4).
|
Table
3
|
|
Habitat
|
Organisms
Responsible for Nitrogen Fixation
|
Rate
of Nitrogen Fixation (Range of mg N/m²/day)
|
~%
of total Nitrogen demand satisfied
|
| Salt
Marsh |
cyanobacteria
sediment
bacteria
|
|
|
| Sea
Grass Bed (Thalassia) |
epiphytes
sediment
bacteria
|
|
|
| Sea
Grass Bed (Zostera) |
epiphytes
sediment
bacteria
|
|
|
| Sea
Grass Bed (Myriophyllum) |
combined
epiphytes &
sediment
bacteria
|
3
|
2
|
| Estuarine
shallows |
|
0.5
- 10
|
1
- 5
|
|
Coastal
Shelf
|
|
0.01
- 1.3
|
1
- 5
|
|
Adapted
from Day et al. 1989
|
|
Table
4
|
|
|
Nitrification
rate (µg of atoms/m²/h)
|
Denitrification
rate(µg of atoms/m²/h)
|
|
Salt
marsh
Sea
grass bed
Estuarine
sediments
Coastal
waters
|
60
20
- 120
0
- 5000
10
- 115
|
|
|
Adapted
from Day et al. 1989
|
The
quantity and quality of various organic and inorganic nutrients obviously
play an important role in determining the composition of microbial communities.
Perhaps the most obvious and important of these is oxygen. Despite the
active reworking of the sediments by a variety of biological and physical
agents, the abundance of microbes and infauna, coupled with the high metabolic
activity of organic particles typically leads to high oxygen consumption.
Anaerobic (reducing) conditions usually exist close to the surface (in
most cases less than 10 cm deep), and in regions of increasingly lower
oxygen, first facultative and then obligate anaerobes dominate.
Facultative bacteria can use oxygen if available, but do not require
it, while obligate anaerobic bacteria cannot survive in the presence
of oxygen. In typical estuarine and seagrass sediments, available oxygen
drops from roughly 12 mg/l in the water column (Eh ~ 400 - 600 mV, for
those of you who measure redox potentials) to about 9-10 mg/l (Eh
~ 300-325) at 1-3 cm depth, and to less than 5 mg/l (Eh ~ 200 mV) at 4-6
cm depth (Levinton 1982). Once available oxygen declines to less than
about 4 mg/l (Eh ~ 150 mV), anaerobic metabolism (facultative) begins
to dominate. When all available oxygen is depleted (Eh = 0) , the production
of hydrogen sulfide increases rapidly with depth (Eh << 0) (Levinton
1982). At this point, there is usually an obvious change in sediment color,
and the light brownish or beige oxidized layer gives way to an oxygen
depleted gray layer which is, in turn, replaced by a black, anoxic reduced
layer. The obvious line separating the upper oxygen-containing layers
(Eh > 0) and the deeper oxygen-free layers (Eh < 0) is referred
to as the redox discontinuity layer (or RDL, see Fig. 1B). This
rapid reduction in available oxygen levels is often not related to diffusion
of oxygen per se, but rather the available oxygen is consumed at a rate
greater than it is able to diffuse within the sediments. This leads to
low oxygen sediments frequently laying within a centimeter or two of the
sediment surface, despite ample diffusion from highly oxygenated water
above it (Day et al. 1989). It is these low oxygen sediments (in which
nitrate - NO3 - is the preferred electron acceptor) that are most significant
in terms of our inclusion of a sandbed in our tanks (I'll come back to
this below).
So what exactly is all this "redox potential" stuff about? Well,
technically, redox potential (Eh) is a measure of the energy gained
in transferring 1 mole of electrons to an oxidant (such as oxygen, nitrate,
sulfate or methane) from hydrogen gas. That probably doesn't help you
much, does it? Well, in order for any organism to survive it needs energy,
right? We get energy by "burning" (oxidizing) ATP (remember
that "powerhouse of the cell" class in high school biology?).
That means that we break down sugars, using oxygen (O2) , and release
carbon dioxide (CO2) as a waste product of that redox (reduction/oxidation)
reaction. We use the energy of transferring an electron to fuel our bodies,
but because there are really no free electrons running around in the environment,
for every reduction there is a corresponding oxidation (hence the term
redox). The easiest way to think of redox potential is a measure of the
relative availability of electrons (and their receptors) in a particular
chemical environment (just like pH is a relative measure of the availability
of hydrogen ions). Redox potential is standardized using oxygen (just
as pH uses pure water as the standard for its "neutral" measurement
of 7.0), and is highly positive in highly oxidized environments, low but
positive in oxygen poor environments, and zero or negative in environments
lacking oxygen (see Fig. 1B). Available oxygen is controlled by a variety
of factors including salinity and temperature, in addition to the biological
processes in which we are primarily interested in our tanks (see Box 1).
Why do we care about these sort of details? Well, because "anoxia
is, arguably, the most important condition of effective decomposition
and denitrification" (Lowrie & Borneman 1998), and an essential
component of the natural function of fine sediment communities in near-reef
habitats. Although there are a variety of metabolic pathways by which
organisms can satisfy their energy and carbon needs, the decomposition
of organic detritus is primarily accomplished by only a couple functional
groups of anaerobic bacteria. These catabolic (organic breakdown)
pathways are fermentation, dissimilatory nitrogenous oxide reduction,
dissimilatory sulfate reduction & methanogenesis (see Fig 1A.). Each
of these pathways can be considered to be associated with a "functional"
group of bacteria that collectively complete that particular biochemical
process. The complex array of organic compounds available for decomposition
can, in general, be used only by the fermenters and dissimilatory nitrogenous
oxide reducers initially, but once the organic molecules are broken down
into small molecular-weight decompositional products by these bacteria,
they become available to the methanogens and sulfate reducers (Fig. 1A).
Obviously this is a gross oversimplification of a very complex subject,
but the topic is beyond the scope of this article - perhaps someone else
will take up the torch and write a follow-up article on catabolic metabolism.
These populations of bacteria are rarely limited by the availability of
organic detritus in natural sediments, but rather by the availability
of suitable electron receptors (Martens & Berner 1974, Sorensen 1984).
This means that the bacterial communities in these sediments should be
capable of processing more detritus in the presence of increased concentrations
of electron receptors (such as nitrite, nitrate and sulfate). Therefore,
these groups of bacteria provide a double service to the aquarist: they
consume organic detritus and perform nitrite, nitrate and sulfate reduction
at the same time. What more could one ask!?
Aside from biotic assimilation, many ions may be adsorbed on the surface
of marine sediments, or they may flocculate or precipitate. Direct adsorption
of dissolved ions to silty sediments is particularly important for highly
charged anions such as phosphate and iron. The binding of these nutrients
to sediments makes it more difficult for animals and plants to assimilate,
thereby reducing the need to remove these compounds from the tank through
chemical means. Marine sediments tend to bind a variety of undesirable
nutrients in salt water, and these include Fe and PO4 (as mentioned above),
as well as Mn, Al, and Si (MacKay & Leatherland 1976).
Studies of nutrient cycling in marine sediments demonstrate that labile
(readily useable) compounds may turn over in a matter of hours in the
water column, but within minutes in sediments. Refractory (difficult
to use) compounds, such as cellulose and lignin, on the other hand, may
take months or years to turn over, even in sediments. Obviously, therefore,
most compounds found within sediment cores are refractory, because the
vast majority of labile compounds (such as ammonia, nitrite & nitrate)
are quickly taken up by living organisms.
The breakdown of refractory compounds is complex, and it remains unclear
whether benthic marine microbial communities derive most of their nutritional
requirements from the small proportion of labile organic matter available
or from the slow decomposition of the more abundant refractory compounds
(Day et al. 1989). Included in the refractory compounds, of course, are
the organic acids (humic, tannic, etc.). These refractory compounds are
slow to break down, but microbial decomposition still takes place, and
measurements of the uptake of these decomposition end-products released
by microbes indicated that it was comparatively slow, but complete (Day
et al. 1989). The nutrients released by the decomposition of these refractory
compounds was immediately taken up by subsurface algae, bacteria and phytoplankton.
The most common genera of bacteria involved in these reactions include
E. coli, Vibrio, Desulfotomaculum, Desulfovibrio, Aeromonas, Thiobacillus,
Ferrobacillus, Beggiota, Chromalium, Clostridium, Pseudomonas, Thiothrix
and Chlorobium (Day et al. 1989). The uptake of these nutrients
is considerable, and contrary to popular thought, the highest rates of
nitrate removal are not by denitrifying bacteria deep in the sandbed,
but rather by this aerobic subsurface community (Oren & Blackburn
1979).
It is clear that because only a select few prokaryotic organisms
(true bacteria and cyanobacteria, or "blue-green algae" are
prokaryotic because their cells lack organelles which all eukaryotic
organisms possess) are capable of "fixing" N2 gas into the inorganic
salt ammonium, nitrogen is often a limiting factor for growth of plants
and algae. Nitrogen-fixation is an energy intensive anaerobic reaction,
which is "poisoned" by the presence of oxygen (oxygen inactivates
the enzyme nitrogenase which is used to convert N2 + 3H2 è 2NH3).
If blue-green algae can fix nitrogen, but that reaction must be anaerobic,
you may wonder how they accomplish that feat. Many blue-green algae have
special packets inside them (called heterocysts) within which they can
maintain anoxic conditions and allow nitrogen fixation to occur, despite
the presence of oxygen in the surrounding cellular medium. In the few
aquatic systems within which it has been measured, nitrogen fixation by
bacteria and blue-green algae constitutes a major component of the total
annual nitrogen input for the entire system, commonly contributing 30-80%
of the overall annual nitrogen budget of the system (Mitchell 1978). The
majority of this nitrogen-fixation occurs in the sub-surface benthos,
in biofilms (coatings on submerged structures such as rocks), and attached
to suspended particulate organic matter (aka "marine snow").
These blue-green algae are an integral part of the sediment community,
and will (should) be found in any live sand shipment.
The presence of this important component of a functional sandbed does
not imply that you are doomed to continual outbreaks of dreaded "red
slime" in your tank, however. As with any other closed system, it
is only when nutrients get out of control that such outbreaks tend to
occur. In the absence of nitrogen limitation, blue-greens typically find
themselves iron or phosphorous limited instead. Phosphorous additions
(without adding any nitrogen at all) have resulted in 5-10 fold increases
in the rate of N2 fixation in natural systems (Lean et al. 1978). Similarly,
doubling available iron levels in a couple of large scale experiments
in the early 1990's (called IronEx I and II) resulted in phytoplankton
and cyanobacterial blooms in the Southern Ocean.
Thus, as an aside, if you are suffering from an algal bloom, look to the
sources of excess nutrients in your tank as a first step in bringing these
outbreaks under control (rather than dosing with antibiotics for red-slime
or other ultimately counter-productive treatments of the symptoms
rather than the causes of the problem). A test kit reading of zero
for the presence of these nutrients does not mean that they are
absent from the tank. You may wonder how that can be, but remember these
organisms can be very efficient at removing required nutrients from the
system, and if they are growing quickly, they can strip nutrients as quickly
as they are added to the system (the turnover time for these nutrient
in the sediments is a matter of minutes, remember). Unless you happen
to catch a huge release within minutes of the event, or the uptake of
the nutrients is less than the input (which is rare unless there are other
problems with your aquarium), your test kit will continue to read zero,
but the algae will continue to thrive.
The ability of organisms to uptake nutrients depends on something known
as it's saturation coefficient (Ks). When Ks is low, relative to competitors,
that organism has a "greater affinity" for the nutrient and
will generally have a competitive advantage over the others when that
nutrient is limiting. However, with higher Ks values, the organisms can
take advantage of higher levels of nutrients because they saturate at
much higher nutrient levels (Table 5). In general macrophytic (multicellular)
and vascular plants tend to have much higher Ks values than do microalgae
and blue-greens. This varies by group, and it is only at nutrient
concentrations below the Ks value (µM concentrations) that
nutrient uptake can limit primary productivity and growth. Thus, you may
be repeatedly testing your water and getting zero readings, but if you
are adding PO4 daily (with food, top-off water, or even detergent left
on your hands), the cyanobacteria will still be able to take it up and
grow.
|
Table
5
|
|
Group
|
Nutrient
|
Ks
(µM)
|
| Phytoplankton |
NO3
NH4
PO4
|
0.4
- 2.6
0.1
- 2.0
0.05
- 0.2
|
| Sea
Grasses |
NH4
(leaves)
NH4
(roots)
|
|
| Macroalgae |
NO3
NH4
|
|
| Benthic
microalgae and cyanobacteria |
PO4
|
0.1
|
|
Adapted
from Day et al. 1989
|
A
number of studies of natural nutrient regeneration levels during decomposition
of organic detritus have shown that NH4, SiO2 and PO4 are released by
decaying phytoplankton in the approximate proportions of 16:16:1 by atom
(Redfield et al. 1963, D'Elia et al. 1983). Ideally, these nutrients are
not released in excess, but are rather taken up by tank inhabitants in
the same proportions (known as the Redfield ratio) as quickly as they
are regenerated. It is the excess addition or selective removal of one
nutrient or another (thereby changing the relative ratios of these nutrients)
that tends to lead to problems in terms of nutrient loading. Hence if
you find your aquarium suffering from the uncontrolled growth of some
"pest" species, you should first look to control the sources
of its nutrition (for example many supplements contain iron, which causes
algal blooms when added to natural seawater) rather than try to eradicate
the problem with treatments that temporarily remove the symptoms of problem
rather than its cause.
In the next issue I will finish my introduction to the factors that control
the decomposition of organic detritus in marine sediments, and describe
the biological community (the critters) associated with these habitats.
I will explain where organisms are found in marine habitats and why, and
will provide some concrete suggestions for aquarists to take advantage
of these systems in the home aquarium.
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